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    LOC4331856 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331856, updated on 13-Jul-2024

    Summary

    Gene symbol
    LOC4331856
    Gene description
    UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
    Locus tag
    OSNPB_030184300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GUX3
    Expression
    Biased expression in flowers (RPKM 62.7), flower buds (RPKM 33.3) and 2 other tissues See more
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    Genomic context

    See LOC4331856 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4439475..4444755)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4428776..4434156)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331855 Neighboring gene uncharacterized LOC9267042 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g67720 Neighboring gene B3 domain-containing protein Os03g0184500-like Neighboring gene putative dihydroflavonol 4-reductase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
    Names
    Os03g0184300
    xylan glucuronyltransferase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      4439475..4444755
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777742.3XP_015633228.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VU02, Q10QT2, Q94HG3
      Conserved Domains (1) summary
      cd02537
      Location:363607
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    2. XM_015777743.3XP_015633229.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VU02, A0A5S6R736, Q0DUI6, Q10QT1, Q10QT2, Q94HG3
      Conserved Domains (2) summary
      cd02537
      Location:210454
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
      COG1442
      Location:285421
      RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]