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    LOC4324744 uncharacterized LOC4324744 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324744, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4324744
    Gene description
    uncharacterized LOC4324744
    Locus tag
    OSNPB_010862200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 98.9), roots after flowering (RPKM 38.9) and 3 other tissues See more
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    Genomic context

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    See LOC4324744 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37315253..37316259)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene protein ABHD11 Neighboring gene transfer RNA leucine (anticodon UAG) Neighboring gene sorting nexin 1 Neighboring gene uncharacterized LOC4324747 Neighboring gene rab-like protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324744
    Names
    Os01g0862200
    P0423B08.8-1
    P0423B08.8-2
    P0679C12.49-1
    P0679C12.49-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      37315253..37316259
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765108.2 → XP_015620594.1  uncharacterized protein LOC4324744

      UniProtKB/TrEMBL
      A0A0P0VAM4, A0A8J8YQ90, A2WX82, Q0JHI4, Q94CW5
    Nucleotide Protein
    Heading Accession and Version

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