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    LOC4342513 protein MET1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342513, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342513
    Gene description
    protein MET1, chloroplastic
    Locus tag
    OSNPB_070171100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 101.8), roots after flowering (RPKM 98.7) and 3 other tissues See more
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    Genomic context

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    See LOC4342513 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (3820095..3822133)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (3759922..3761946)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342511 Neighboring gene uncharacterized LOC4342512 Neighboring gene ADP-glucose phosphorylase Neighboring gene casein kinase 1-like protein HD16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein MET1, chloroplastic
    Names
    OSJNBa0050F10.39-1
    OSJNBa0050F10.39-2
    Os07g0171100
    P0496D04.12-1
    P0496D04.12-2
    putative SHOOT1 protein
    putative tyrosine phosphatase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      3820095..3822133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791988.3 → XP_015647474.1  protein MET1, chloroplastic

      UniProtKB/TrEMBL
      A2YIK9, A3BH04, Q69LC0, Q69U30
      Conserved Domains (2) summary
      PLN03098
      Location:218 → 309
      LPA1; LOW PSII ACCUMULATION1; Provisional
      sd00006
      Location:221 → 245
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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