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    KIN4A kinesin-like protein KIN-4A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346402, updated on 10-Oct-2024

    Summary

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    Gene symbol
    KIN4A
    Gene description
    kinesin-like protein KIN-4A
    Locus tag
    OSNPB_090114500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BC2; GDD1; KIF4-like; OsJ_28385; OJ1134_E08.39-1; OJ1134_E08.39-2; OJ1134_E08.39-3
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    Genomic context

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    See KIN4A in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (5178040..5187830)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (1158010..1167872)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351745 Neighboring gene uncharacterized LOC112936470 Neighboring gene probable inactive histone-lysine N-methyltransferase SUVR1 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a novel allele of bc12/gdd1 indicates a differential leaf color function for BC12/GDD1 in Indica and Japonica backgrounds. Hu B, et al. Plant Sci, 2020 Sep. PMID 32771145
    2. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Characterization of a novel allele of bc12/gdd1 indicates a differential leaf color function for BC12/GDD1 in Indica and Japonica backgrounds.
      Title: Characterization of a novel allele of bc12/gdd1 indicates a differential leaf color function for BC12/GDD1 in Indica and Japonica backgrounds.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule motor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule-based movement IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic spindle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spindle elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of microtubule associated complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kinesin-like protein KIN-4A
    Names
    LOC_Os09g02650
    Protein BRITTLE CULM 2
    Protein GIBBERELLIN-DEFICIENT DWARF 1
    kinesin-like protein BC2
    putative KIF4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403707.1 → NP_001390636.1  kinesin-like protein KIN-4A isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK067738, AK100974, AY224568, CB644373, CB685127, CI447920, CI465788
      UniProtKB/Swiss-Prot
      A0A0P0XKI2, B9G250, Q6YUL7, Q6YUL8

    2. NM_001403708.1 → NP_001390637.1  kinesin-like protein KIN-4A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK058665, AK067738, AK100974, AY224568, CB644373, CB685127, CI447920, CI465788
      UniProtKB/TrEMBL
      B8BCY0

    RNA

    1. NR_175402.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK067738, AK100974, CB644373, CB685127, CI224651, CI447920, CI465788

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      5178040..5187830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6YUL8.1 GenPept UniProtKB/Swiss-Prot:Q6YUL8

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