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    LOC4334834 replication protein A 70 kDa DNA-binding subunit B-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334834, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4334834
    Gene description
    replication protein A 70 kDa DNA-binding subunit B-like
    Locus tag
    OSNPB_030855700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 16.8), roots after flowering (RPKM 11.4) and 6 other tissues See more
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    Genomic context

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    See LOC4334834 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (37061349..37075467)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (36082351..36096496)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4334832 Neighboring gene outer envelope pore protein 24, chloroplastic-like Neighboring gene S-norcoclaurine synthase 1 Neighboring gene pentatricopeptide repeat-containing protein At5g46580, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    replication protein A 70 kDa DNA-binding subunit B-like; uncharacterized protein LOC4334834
    Names
    Os03g0855700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      37061349..37075467
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775833.3 → XP_015631319.1  uncharacterized protein LOC4334834 isoform X1

      Conserved Domains (3) summary
      cd04476
      Location:413 → 562
      RPA1_DBD_C; RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which ...
      cd04480
      Location:163 → 251
      RPA1_DBD_A_like; RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
      cd04481
      Location:286 → 389
      RPA1_DBD_B_like; RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...

    2. XM_015775835.3 → XP_015631321.1  replication protein A 70 kDa DNA-binding subunit B-like isoform X3

      UniProtKB/TrEMBL
      Q0DLN0, Q10AD8, Q75IQ2
      Conserved Domains (3) summary
      cd04476
      Location:321 → 470
      RPA1_DBD_C; A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to ...
      cd04480
      Location:71 → 159
      RPA1_DBD_A_like; A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) ...
      cd04481
      Location:194 → 297
      RPA1_DBD_B_like; A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) ...

    3. XM_066308233.1 → XP_066164330.1  replication protein A 70 kDa DNA-binding subunit B-like isoform X4

    4. XM_066308234.1 → XP_066164331.1  replication protein A 70 kDa DNA-binding subunit B-like isoform X5

    5. XM_015775834.3 → XP_015631320.1  replication protein A 70 kDa DNA-binding subunit B-like isoform X2

      UniProtKB/TrEMBL
      Q75IQ2
      Conserved Domains (3) summary
      cd04476
      Location:325 → 474
      RPA1_DBD_C; RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which ...
      cd04480
      Location:75 → 163
      RPA1_DBD_A_like; RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
      cd04481
      Location:198 → 301
      RPA1_DBD_B_like; RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...

    6. XM_015775836.3 → XP_015631322.1  replication protein A 70 kDa DNA-binding subunit B-like isoform X4

      UniProtKB/TrEMBL
      Q75IQ2
      Conserved Domains (3) summary
      cd04476
      Location:278 → 427
      RPA1_DBD_C; RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which ...
      cd04480
      Location:28 → 116
      RPA1_DBD_A_like; RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
      cd04481
      Location:151 → 254
      RPA1_DBD_B_like; RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...

    RNA

    1. XR_001544621.3 RNA Sequence

    2. XR_010739805.1 RNA Sequence

    3. XR_010739804.1 RNA Sequence

    Nucleotide Protein
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