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    LOC4352424 E3 ubiquitin-protein ligase MIEL1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352424, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4352424
    Gene description
    E3 ubiquitin-protein ligase MIEL1
    Locus tag
    OSNPB_120538500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 21.2), leaves before flowering (RPKM 21.0) and 6 other tissues See more
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    Genomic context

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    See LOC4352424 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (22142992..22146521)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (21456305..21459895)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene conserved oligomeric Golgi complex subunit 8 Neighboring gene uncharacterized LOC107279807 Neighboring gene uncharacterized LOC136354636 Neighboring gene putative glutaredoxin-C14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase MIEL1
    Names
    Os12g0538500
    putative RING finger and CHY zinc finger domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      22142992..22146521
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762846.3 → XP_015618332.1  E3 ubiquitin-protein ligase MIEL1

      UniProtKB/TrEMBL
      A0A8J8YK94, B9GDJ5, Q0IMV5, Q2QP88
      Conserved Domains (3) summary
      pfam05495
      Location:33 → 110
      zf-CHY; CHY zinc finger
      pfam14599
      Location:211 → 268
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:163 → 207
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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