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    LOC4347695 probable E3 ubiquitin-protein ligase ATL44 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347695, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4347695
    Gene description
    probable E3 ubiquitin-protein ligase ATL44
    Locus tag
    OSNPB_090535500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0569E11.7
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    Genomic context

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    See LOC4347695 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (25498557..25499457, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21056547..21057504, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene protein XAP5 CIRCADIAN TIMEKEEPER-like Neighboring gene proline-rich receptor-like protein kinase PERK2 Neighboring gene uncharacterized LOC107278482 Neighboring gene uncharacterized LOC4347696

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase ATL44
    Names
    Os09g0535500
    RING-H2 finger protein ATL44

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      25498557..25499457 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755486.3 → XP_015610972.1  probable E3 ubiquitin-protein ligase ATL44

      UniProtKB/TrEMBL
      A0A0P0XPT5, B7F161, Q69JZ5
      Conserved Domains (1) summary
      cd00162
      Location:123 → 170
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    Nucleotide Protein
    Heading Accession and Version

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