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    LOC4332626 pentatricopeptide repeat-containing protein At3g06430, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332626, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4332626
    Gene description
    pentatricopeptide repeat-containing protein At3g06430, chloroplastic
    Locus tag
    OSNPB_030309800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 39.7), roots after flowering (RPKM 17.5) and 5 other tissues See more
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    Genomic context

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    See LOC4332626 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (11101927..11106939)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11048396..11053448)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable pectinesterase 67 Neighboring gene transcription factor MYB44-like Neighboring gene F-box protein SKIP2-like Neighboring gene GDSL esterase/lipase At4g16230

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At3g06430, chloroplastic
    Names
    Os03g0309800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      11101927..11106939
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777715.3 → XP_015633201.3  pentatricopeptide repeat-containing protein At3g06430, chloroplastic

      UniProtKB/TrEMBL
      A0A8J8XS19, A3AH93, Q0DSG1, Q10MG3

    RNA

    1. XR_001544870.3 RNA Sequence

    2. XR_010740126.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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