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    LOC4335983 mitochondrial phosphate carrier protein 3, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335983, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4335983
    Gene description
    mitochondrial phosphate carrier protein 3, mitochondrial
    Locus tag
    OSNPB_040448800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 39.1), flower buds (RPKM 22.8) and 5 other tissues See more
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    Genomic context

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    See LOC4335983 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22855032..22859994)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22362228..22367137)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene gamma-glutamylcyclotransferase 2-3 Neighboring gene F-box protein FBW2-like Neighboring gene zeaxanthin epoxidase, chloroplastic-like Neighboring gene mitochondrial uncoupling protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial phosphate ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial phosphate carrier protein 3, mitochondrial
    Names
    Os04g0448800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419365.1 → NP_001406294.1  mitochondrial phosphate carrier protein 3, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AK069397, AK105021, AP014960
      UniProtKB/TrEMBL
      Q01J73, Q0JCU8, Q7XV24

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22855032..22859994
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778092.3 → XP_015633578.1  mitochondrial phosphate carrier protein 3, mitochondrial isoform X1

      UniProtKB/TrEMBL
      B8AUD7, B9FFF1
      Conserved Domains (2) summary
      PTZ00169
      Location:170 → 345
      PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
      pfam00153
      Location:69 → 155
      Mito_carr; Mitochondrial carrier protein
    Nucleotide Protein
    Heading Accession and Version

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