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    LOC4341212 RING-H2 finger protein ATL74 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341212, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4341212
    Gene description
    RING-H2 finger protein ATL74
    Locus tag
    OSNPB_060535200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    EL5-like
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (20889330..20890890, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20033241..20034672, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270717 Neighboring gene putative DEAD-box ATP-dependent RNA helicase 51 Neighboring gene uncharacterized LOC4341213 Neighboring gene uncharacterized LOC107278073

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    RING-H2 finger protein ATL74
    Names
    OSJNBa0001B21.19
    Os06g0535200
    putative zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      20889330..20890890 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787846.2 → XP_015643332.1  RING-H2 finger protein ATL74

      UniProtKB/TrEMBL
      A0A0P0WXV3, B8B3C2, Q5Z5F5
      Conserved Domains (1) summary
      cd16461
      Location:158 → 198
      RING-H2_EL5_like; RING finger, H2 subclass, found in rice E3 ubiquitin-protein ligase EL5 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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