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    LOC4339101 U-box domain-containing protein 16 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339101, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4339101
    Gene description
    U-box domain-containing protein 16
    Locus tag
    OSNPB_050476700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339101 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (23577591..23579881)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (23463191..23465606)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene CBL-interacting protein kinase 28-like Neighboring gene small nucleolar RNA Z247 Neighboring gene E3 ubiquitin-protein ligase EL5 Neighboring gene transcription repressor OFP1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 16
    Names
    Os05g0476700
    arm repeat protein
    putative spotted leaf 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      23577591..23579881
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782045.3 → XP_015637531.1  U-box domain-containing protein 16

      UniProtKB/TrEMBL
      A2Y5R1, Q75GN8, Q84VE7
      Conserved Domains (5) summary
      smart00504
      Location:279 → 341
      Ubox; Modified RING finger domain
      PLN03200
      Location:389 → 610
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:411 → 447
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:408 → 446
      Arm; Armadillo/beta-catenin-like repeat
      cl05301
      Location:55 → 138
      MLKL_NTD; N-terminal domain of mixed lineage kinase domain-like protein (MLKL) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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