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    LOC4349212 bZIP transcription factor 29 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349212, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4349212
    Gene description
    bZIP transcription factor 29
    Locus tag
    OSNPB_100531900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 7.4), flowers (RPKM 2.6) and 3 other tissues See more
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    Genomic context

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    See LOC4349212 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (21352436..21354989, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20658499..20663392, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g12460 Neighboring gene NAC domain-containing protein 105 Neighboring gene lysine-specific histone demethylase 1 homolog 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bZIP transcription factor 29
    Names
    Os10g0531900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      21352436..21354989 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758307.3 → XP_015613793.1  bZIP transcription factor 29

      UniProtKB/TrEMBL
      A0A0N7KS44, Q8LMJ4, Q8LN44
      Conserved Domains (2) summary
      COG4372
      Location:212 → 362
      COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
      cd14703
      Location:249 → 298
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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