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    LOC4344547 30S ribosomal protein S21, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344547, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4344547
    Gene description
    30S ribosomal protein S21, chloroplastic
    Locus tag
    OSNPB_080121800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 2.7), flower buds (RPKM 2.4) and 6 other tissues See more
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    Genomic context

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    See LOC4344547 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1192934..1195405)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene UPF0481 protein At3g47200-like Neighboring gene uncharacterized LOC107276497 Neighboring gene glycosyltransferase family 92 protein Os08g0121900-like Neighboring gene serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    30S ribosomal protein S21, chloroplastic
    Names
    B1203H11.31
    OSJNBa0073J19.8
    OSJNBa0091F23.16
    Os08g0121800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1192934..1195405
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793451.2 → XP_015648937.1  30S ribosomal protein S21, chloroplastic

      UniProtKB/TrEMBL
      A2YQR8, Q0J8B9, Q6YRM7, Q6YX40
      Conserved Domains (1) summary
      pfam01165
      Location:70 → 102
      Ribosomal_S21; Ribosomal protein S21
    Nucleotide Protein
    Heading Accession and Version

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