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    LOC4352780 single myb histone 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352780, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4352780
    Gene description
    single myb histone 6
    Locus tag
    OSNPB_120613300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    bip127
    Expression
    Ubiquitous expression in flower buds (RPKM 17.6), leaves after flowering (RPKM 16.9) and 6 other tissues See more
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    Genomic context

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    See LOC4352780 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25984512..25987982, complement)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene cationic amino acid transporter 1 Neighboring gene BTB/POZ domain-containing protein At1g30440 Neighboring gene nucleolar and coiled-body phosphoprotein 1 Neighboring gene remorin 4.1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    single myb histone 6
    Names
    BRI1-KD interacting protein 127
    Myb-like DNA binding domain containing protein
    Os12g0613300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25984512..25987982 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765332.1 → XP_015620818.1  single myb histone 6

      UniProtKB/TrEMBL
      Q0ILY3, Q2QM89, Q761Y7
      Conserved Domains (2) summary
      smart00526
      Location:116 → 178
      H15; Domain in histone families 1 and 5
      cd11660
      Location:6 → 57
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    2. XM_015765331.2 → XP_015620817.1  single myb histone 6

      UniProtKB/TrEMBL
      Q0ILY3, Q2QM89, Q761Y7
      Conserved Domains (2) summary
      smart00526
      Location:116 → 178
      H15; Domain in histone families 1 and 5
      cd11660
      Location:6 → 57
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    3. XM_026022176.1 → XP_025877961.1  single myb histone 6

      UniProtKB/TrEMBL
      Q0ILY3, Q2QM89, Q761Y7
      Conserved Domains (2) summary
      smart00526
      Location:116 → 178
      H15; Domain in histone families 1 and 5
      cd11660
      Location:6 → 57
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    Nucleotide Protein
    Heading Accession and Version

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