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    LOC4326776 hexokinase-8-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326776, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4326776
    Gene description
    hexokinase-8-like
    Locus tag
    OSNPB_010190400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HXK4; HXK8
    Expression
    Broad expression in mature seeds (RPKM 7.2), flower buds (RPKM 6.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (4830964..4834045, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (4820124..4823320, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene clavaminate synthase-like protein At3g21360 Neighboring gene auxin-responsive protein IAA2-like Neighboring gene protein IQ-domain 26 Neighboring gene uncharacterized LOC136354978

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Structure, expression, and functional analysis of the hexokinase gene family in rice (Oryza sativa L.). Cho JI, et al. Planta, 2006 Aug. PMID 16552590
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables D-glucose binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables fructokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glucokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glucose 6-phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular glucose homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hexokinase-8
    Names
    Hexokinase-4
    LOC_Os01g09460
    P0710E05.19
    hexokinase 4
    putative hexokinase
    NP_001388586.1
    XP_015622018.1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401657.1 → NP_001388586.1  hexokinase-8

      Status: VALIDATED

      Source sequence(s)
      AK064011
      UniProtKB/Swiss-Prot
      B7E9B5, Q1WM15, Q5SNH9
      UniProtKB/TrEMBL
      B8ADP4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      4830964..4834045 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766532.3 → XP_015622018.1  hexokinase-8 isoform X1

      UniProtKB/TrEMBL
      B8ADP4, B9ETK9
      Conserved Domains (3) summary
      PLN02405
      Location:4 → 471
      PLN02405; hexokinase
      pfam00349
      Location:10 → 209
      Hexokinase_1; Hexokinase
      pfam03727
      Location:217 → 468
      Hexokinase_2; Hexokinase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1WM15.2 GenPept UniProtKB/Swiss-Prot:Q1WM15

    Gene LinkOut

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    Research Materials