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    LOC4331715 pentatricopeptide repeat-containing protein At3g23020 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331715, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331715
    Gene description
    pentatricopeptide repeat-containing protein At3g23020
    Locus tag
    OSNPB_030162900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 3.8), flower buds (RPKM 2.9) and 6 other tissues See more
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    Genomic context

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    See LOC4331715 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3417431..3426216)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3407897..3416716)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331713 Neighboring gene probable 3-ketoacyl-CoA synthase 20 Neighboring gene putative ion channel POLLUX-like 2 Neighboring gene UPF0481 protein At3g47200 Neighboring gene glutathione reductase, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At3g23020
    Names
    Os03g0162900
    Os03g0163000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      3417431..3426216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024324.2 → XP_025880109.1  pentatricopeptide repeat-containing protein At3g23020

      UniProtKB/TrEMBL
      A0A8J8XMN8, B8ANW2, B9FBG8, Q0DUX0, Q10RD7
      Conserved Domains (3) summary
      PLN03218
      Location:188 → 608
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:255 → 282
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:140 → 188
      PPR_2; PPR repeat family

    RNA

    1. XR_003241455.2 RNA Sequence

    2. XR_003241456.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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