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    LOC9271190 uncharacterized LOC9271190 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271190, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC9271190
    Gene description
    uncharacterized LOC9271190
    Locus tag
    OSNPB_020453100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 3.9), leaves after flowering (RPKM 3.9) and 5 other tissues See more
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    Genomic context

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    See LOC9271190 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (15428047..15431446)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (14968752..14977934)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable protein transport Sec1a Neighboring gene uncharacterized LOC136355336 Neighboring gene uncharacterized LOC136355334 Neighboring gene uncharacterized LOC4329273

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    uncharacterized protein LOC9271190
    Names
    Os02g0453100
    P0533E11.28

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      15428047..15431446
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307788.1 → XP_066163885.1  uncharacterized protein LOC9271190 isoform X3

    2. XM_066307787.1 → XP_066163884.1  uncharacterized protein LOC9271190 isoform X2

    3. XM_066307786.1 → XP_066163883.1  uncharacterized protein LOC9271190 isoform X1

    4. XM_066307784.1 → XP_066163881.1  uncharacterized protein LOC9271190 isoform X1

    5. XM_066307785.1 → XP_066163882.1  uncharacterized protein LOC9271190 isoform X1

    6. XM_026023470.2 → XP_025879255.1  uncharacterized protein LOC9271190 isoform X1

    RNA

    1. XR_010739513.1 RNA Sequence

    2. XR_010739514.1 RNA Sequence

    3. XR_010739516.1 RNA Sequence

    4. XR_010739518.1 RNA Sequence

    5. XR_003240994.2 RNA Sequence

    6. XR_010739517.1 RNA Sequence

    7. XR_010739515.1 RNA Sequence

    8. XR_010739520.1 RNA Sequence

    9. XR_010739519.1 RNA Sequence

    10. XR_010739512.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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