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    LOC4336368 transcriptional corepressor LEUNIG_HOMOLOG [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336368, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4336368
    Gene description
    transcriptional corepressor LEUNIG_HOMOLOG
    Locus tag
    OSNPB_040510200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 29.2), flower buds (RPKM 26.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (26027444..26035624)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25526675..25534660)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene ammonium transporter 1 member 1-like Neighboring gene uncharacterized LOC4336366 Neighboring gene DEAD-box ATP-dependent RNA helicase 13 Neighboring gene putative G3BP-like protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcriptional corepressor LEUNIG_HOMOLOG
    Names
    Os04g0510200
    Os04g0510300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      26027444..26035624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781471.3 → XP_015636957.1  transcriptional corepressor LEUNIG_HOMOLOG isoform X1

      UniProtKB/TrEMBL
      B8ARP9, B9FG36
      Conserved Domains (3) summary
      cd00200
      Location:517 → 794
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:520 → 557
      7WD40; WD40 repeat [structural motif]
      pfam08513
      Location:11 → 35
      LisH

    2. XM_066309450.1 → XP_066165547.1  transcriptional corepressor LEUNIG_HOMOLOG isoform X2

      UniProtKB/TrEMBL
      B8ARP9, B9FG36, Q01HE9, Q7XQ08

    3. XM_015781470.3 → XP_015636956.1  transcriptional corepressor LEUNIG_HOMOLOG isoform X1

      UniProtKB/TrEMBL
      B8ARP9, B9FG36
      Conserved Domains (3) summary
      cd00200
      Location:517 → 794
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:520 → 557
      7WD40; WD40 repeat [structural motif]
      pfam08513
      Location:11 → 35
      LisH

    4. XM_015781473.2 → XP_015636959.1  transcriptional corepressor LEUNIG_HOMOLOG isoform X2

      UniProtKB/TrEMBL
      B8ARP9, B9FG36, Q01HE9, Q7XQ08
      Conserved Domains (3) summary
      cd00200
      Location:516 → 793
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:519 → 556
      7WD40; WD40 repeat [structural motif]
      pfam08513
      Location:11 → 35
      LisH
    Nucleotide Protein
    Heading Accession and Version

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