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    LOC4331532 glutathione S-transferase F11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331532, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4331532
    Gene description
    glutathione S-transferase F11
    Locus tag
    OSNPB_030134900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 6.5), flower buds (RPKM 4.0) and 2 other tissues See more
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    Genomic context

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    See LOC4331532 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (1946123..1947599, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (1938211..1939705, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 78A6 Neighboring gene protein IQ-DOMAIN 17 Neighboring gene glutathione S-transferase F11 Neighboring gene glutathione S-transferase F10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Organisation and structural evolution of the rice glutathione S-transferase gene family. Soranzo N, et al. Mol Genet Genomics, 2004 Jun. PMID 15069639
    2. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutathione binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glutathione transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutathione metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutathione S-transferase F11
    Names
    Os03g0134900
    glutathione S-transferase F12
    glutathione S-transferase GSTF14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      1946123..1947599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773517.3 → XP_015629003.1  glutathione S-transferase F11

      UniProtKB/TrEMBL
      A2XC62, A3ADU9, Q8H8D6
      Conserved Domains (1) summary
      PLN02395
      Location:6 → 273
      PLN02395; glutathione S-transferase
    Nucleotide Protein
    Heading Accession and Version

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