LOC4339340 vesicle-fusing ATPase [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4339340
Gene description: vesicle-fusing ATPase
Locus tag: OSNPB_050519400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: NSF; SEC18; OsSec18; OsJ_19229
Expression: Ubiquitous expression in leaves after flowering (RPKM 56.4), flower buds (RPKM 54.7) and 6 other tissues See more
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Genomic context

Location:: chromosome: 5

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	5	NC_089039.1 (25899609..25906413, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	5	NC_029260.1 (25781812..25788555, complement)

Chromosome 5 - NC_089039.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in Golgi to plasma membrane protein transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in SNARE complex disassembly	IEA Inferred from Electronic Annotation more info	PubMed
involved_in intra-Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in Golgi stack	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: vesicle-fusing ATPase

Names: LOC_Os05g44310; N-ethylmaleimide-sensitive fusion protein; Os05g0519400; P0599F04.10; Vesicular-fusion protein Sec18

NP_001389527.1

EC 3.6.4.6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.