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    LOC4332294 uncharacterized LOC4332294 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332294, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4332294
    Gene description
    uncharacterized LOC4332294
    Locus tag
    OSNPB_030255900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 33.6), leaves after flowering (RPKM 12.7) and 3 other tissues See more
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    Genomic context

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    See LOC4332294 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (8291713..8292640, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (8241529..8242533, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332292 Neighboring gene phosphoenolpyruvate carboxykinase (ATP) Neighboring gene uncharacterized LOC4332295 Neighboring gene imidazole glycerol phosphate synthase hisHF, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4332294
    Names
    Os03g0255900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      8291713..8292640 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773583.3 → XP_015629069.1  uncharacterized protein LOC4332294

      UniProtKB/TrEMBL
      A0A9K3Y888, A2XEP2, A3AG68, A3AG71, Q10NW5
      Conserved Domains (1) summary
      pfam13962
      Location:45 → 150
      PGG; Domain of unknown function
    Nucleotide Protein
    Heading Accession and Version

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