U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4332146 inositol-tetrakisphosphate 1-kinase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332146, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4332146
    Gene description
    inositol-tetrakisphosphate 1-kinase 2-like
    Locus tag
    OSNPB_030230500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DSM3; ITL1; ITPK2; OsDSM3; OsITL1; OsITPK2; OsJ_10020; OJ1017C11.3; OJ1781E12.6
    Expression
    Ubiquitous expression in mature seeds (RPKM 13.5), roots before flowering (RPKM 11.8) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4332146 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6950556..6955855)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6901929..6907420)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene probable inactive poly [ADP-ribose] polymerase SRO2 Neighboring gene homeobox-leucine zipper protein HOX19-like Neighboring gene branched-chain-amino-acid aminotransferase 5, chloroplastic Neighboring gene squalene monooxygenase SE1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables inositol-1,3,4-trisphosphate 5-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables inositol-1,3,4-trisphosphate 6-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables inositol-3,4,5,6-tetrakisphosphate 1-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in inositol trisphosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    inositol-tetrakisphosphate 1-kinase 2
    Names
    Inositol 1,3,4-trisphosphate 5/6-kinase 2
    Inositol-triphosphate 5/6-kinase 2
    Ins(1,3,4)P(3) 5/6-kinase 2
    LOC_Os03g12840
    OsITP5/6K-2
    NP_001404366.1
    XP_015632764.1
    XP_015632765.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417437.1 → NP_001404366.1  inositol-tetrakisphosphate 1-kinase 2

      Status: VALIDATED

      Source sequence(s)
      CB661289, CI363603, CI396832, CI613168, CI739891, CI756579, D46351
      UniProtKB/Swiss-Prot
      A0A0P0VUY1, A1KXK8, B8AJL9, B9F6M0, Q10PL5, Q8GSI5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      6950556..6955855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777279.3 → XP_015632765.1  inositol-tetrakisphosphate 1-kinase 2 isoform X2

      Conserved Domains (1) summary
      cl17255
      Location:1 → 215
      ATP-grasp_4; ATP-grasp domain

    2. XM_015777278.3 → XP_015632764.1  inositol-tetrakisphosphate 1-kinase 2 isoform X1

      Conserved Domains (1) summary
      PLN02941
      Location:18 → 318
      PLN02941; inositol-tetrakisphosphate 1-kinase

    RNA

    1. XR_010739767.1 RNA Sequence

    2. XR_001544795.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10PL5.1 GenPept UniProtKB/Swiss-Prot:Q10PL5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials