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    LOC4335997 RING-H2 finger protein ATL51 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335997, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4335997
    Gene description
    RING-H2 finger protein ATL51
    Locus tag
    OSNPB_040450400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4335997 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22441947..22443865, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g09450, mitochondrial Neighboring gene E3 ubiquitin-protein ligase ATL6 Neighboring gene uncharacterized LOC4335998 Neighboring gene FK506-binding protein 2 Neighboring gene arabinogalactan protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development. Yan D, et al. Plant J, 2015 Apr. PMID 25647350
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RING-H2 finger protein ATL51
    Names
    Os04g0450400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22441947..22443865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780947.2 → XP_015636433.1  RING-H2 finger protein ATL51

      UniProtKB/TrEMBL
      A0A0P0WAW5, Q01JI7
      Conserved Domains (1) summary
      pfam13639
      Location:300 → 343
      zf-RING_2; Ring finger domain
    Nucleotide Protein
    Heading Accession and Version

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