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    LOC4329013 ent-copalyl diphosphate synthase 1, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329013, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4329013
    Gene description
    ent-copalyl diphosphate synthase 1, chloroplastic-like
    Locus tag
    OSNPB_020278700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CPS1; OsCPS; OsCPS1; OsCPS1ent
    Expression
    Biased expression in roots before flowering (RPKM 60.4), flowers (RPKM 32.4) and 1 other tissue See more
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    Genomic context

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    See LOC4329013 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (10302707..10312762, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (10273711..10283774, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene zealexin A1 synthase Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene uncharacterized LOC136355111 Neighboring gene small nucleolar RNA R71 Neighboring gene tobamovirus multiplication protein 2B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Biological functions of ent- and syn-copalyl diphosphate synthases in rice: key enzymes for the branch point of gibberellin and phytoalexin biosynthesis. Otomo K, et al. Plant J, 2004 Sep. PMID 15341631
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables terpene synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gibberellin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ent-copalyl diphosphate synthase 1, chloroplastic
    Names
    Ent-CDP synthase 1
    Ent-kaurene synthase A
    LOC_Os02g17780
    P0444A09.11
    ent-copalyldiphosphate synthase
    putative kaurene synthase A
    NP_001403441.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416512.1 → NP_001403441.1  ent-copalyl diphosphate synthase 1, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK100333, AP014958
      UniProtKB/Swiss-Prot
      A0A0P0VHK1, Q68BJ4, Q6ET36
      UniProtKB/TrEMBL
      B8AFL6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      10302707..10312762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ET36.1 GenPept UniProtKB/Swiss-Prot:Q6ET36

    Gene LinkOut

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    Research Materials