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    LOC4324280 putative ubiquitin-conjugating enzyme E2 38 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324280, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324280
    Gene description
    putative ubiquitin-conjugating enzyme E2 38
    Locus tag
    OSNPB_010232500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0702F03.1
    Expression
    Ubiquitous expression in roots before flowering (RPKM 24.8), roots after flowering (RPKM 20.6) and 6 other tissues See more
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    Genomic context

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    See LOC4324280 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7351755..7356342)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7340663..7345354)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein JINGUBANG Neighboring gene tRNase Z TRZ3, mitochondrial Neighboring gene histidinol dehydrogenase, chloroplastic-like Neighboring gene glycosyltransferase-like KOBITO 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ubiquitin-conjugating enzyme E2 24; putative ubiquitin-conjugating enzyme E2 38
    Names
    Os01g0232500
    ubiquitin-conjugating enzyme -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      7351755..7356342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766460.3 → XP_015621946.1  probable ubiquitin-conjugating enzyme E2 24 isoform X1

      UniProtKB/TrEMBL
      A2WMG0
      Conserved Domains (1) summary
      cd00195
      Location:200 → 327
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    2. XM_015766462.3 → XP_015621948.1  putative ubiquitin-conjugating enzyme E2 38 isoform X3

      UniProtKB/TrEMBL
      A0A0P0V058, A2WMG0, Q5NAY5
      Conserved Domains (1) summary
      cd00195
      Location:185 → 312
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    3. XM_015766461.3 → XP_015621947.1  putative ubiquitin-conjugating enzyme E2 38 isoform X2

      UniProtKB/TrEMBL
      A2WMG0
      Conserved Domains (1) summary
      cd00195
      Location:186 → 313
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    Nucleotide Protein
    Heading Accession and Version

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