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    LOC4329171 large ribosomal subunit protein uL1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329171, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329171
    Gene description
    large ribosomal subunit protein uL1-like
    Locus tag
    OSNPB_020321900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in milk grains (RPKM 145.2), flower buds (RPKM 138.6) and 6 other tissues See more
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    Genomic context

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    See LOC4329171 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (12904973..12907831)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (12869382..12872340)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280090 Neighboring gene uncharacterized LOC4329170 Neighboring gene mitogen-activated protein kinase kinase kinase 18 Neighboring gene uncharacterized LOC9268370

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein uL1-like
    Names
    OSJNBa0073A18.28
    Os02g0321900
    putative ribosomal protein L10a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      12904973..12907831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771861.3 → XP_015627347.1  large ribosomal subunit protein uL1-like

      UniProtKB/TrEMBL
      A0A0N7KF69, A2WX71, Q5N7C5, Q6ER67, Q8LR24
      Conserved Domains (1) summary
      PTZ00029
      Location:1 → 216
      PTZ00029; 60S ribosomal protein L10a; Provisional
    Nucleotide Protein
    Heading Accession and Version

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