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    LOC4349214 lysine-specific histone demethylase 1 homolog 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349214, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349214
    Gene description
    lysine-specific histone demethylase 1 homolog 3
    Locus tag
    OSNPB_100532100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 5.7), roots after flowering (RPKM 5.7) and 6 other tissues See more
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    Genomic context

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    See LOC4349214 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (21372254..21380764)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20680581..20689226)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor 29 Neighboring gene NAC domain-containing protein 105 Neighboring gene uncharacterized LOC112936599 Neighboring gene probable lysophospholipase BODYGUARD 3 Neighboring gene heavy metal-associated isoprenylated plant protein 39

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific histone demethylase 1 homolog 3
    Names
    Os10g0532100
    Os10g0532150

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      21372254..21380764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758932.3 → XP_015614418.1  lysine-specific histone demethylase 1 homolog 3

      UniProtKB/TrEMBL
      B8BHZ9, Q336Y0
      Conserved Domains (1) summary
      PLN02976
      Location:204 → 1830
      PLN02976; amine oxidase
    Nucleotide Protein
    Heading Accession and Version

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