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    LOC4352709 transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352709, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352709
    Gene description
    transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
    Locus tag
    OSNPB_120597800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (25828426..25832215)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25115917..25119760)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene flowering locus K homology domain-like Neighboring gene protein WRKY1 Neighboring gene uncharacterized LOC107279560 Neighboring gene uncharacterized LOC136351132

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
    Names
    Os12g0597800
    putative transcription factor bHLH056

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      25828426..25832215
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764147.3 → XP_015619633.1  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like

      UniProtKB/TrEMBL
      A0A8J8Y2U3, B8BMU4, B9GE36, Q2QMN2
      Conserved Domains (1) summary
      cl00081
      Location:154 → 215
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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