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    LOC4345705 RING-H2 finger protein ATL13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345705, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4345705
    Gene description
    RING-H2 finger protein ATL13
    Locus tag
    OSNPB_080445000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4345705 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21838746..21840821)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21700157..21702444)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351509 Neighboring gene uncharacterized LOC112939831 Neighboring gene glyoxylate/hydroxypyruvate reductase A HPR2 Neighboring gene probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    RING-H2 finger protein ATL13
    Names
    Os08g0445000
    P0479C12.18
    P0708B04.43
    putative RING finger 1
    putative RING-H2 finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      21838746..21840821
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793534.3 → XP_015649020.1  RING-H2 finger protein ATL13

      UniProtKB/TrEMBL
      A2YVP9, A3BTL7, Q6Z8P9, Q6ZCH6
      Conserved Domains (1) summary
      cd16454
      Location:152 → 195
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    Nucleotide Protein
    Heading Accession and Version

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