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    LOC4332058 protein DROOPING LEAF-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332058, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4332058
    Gene description
    protein DROOPING LEAF-like
    Locus tag
    OSNPB_030215200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DL; OsJ_009541
    Expression
    Biased expression in flowers (RPKM 51.2), flower buds (RPKM 49.7) and 1 other tissue See more
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    Genomic context

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    See LOC4332058 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6041178..6048701)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332056 Neighboring gene GDP-mannose transporter GONST3 Neighboring gene MADS-box transcription factor 1-like Neighboring gene microtubule-associated protein 70-4-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Genome-wide expression profiling and identification of genes under the control of the DROOPING LEAF gene during midrib development in rice. Abiko M, et al. Genes Genet Syst, 2008 Jun. PMID 18670135
    2. The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa. Yamaguchi T, et al. Plant Cell, 2004 Feb. PMID 14729915, Free PMC Article
    3. The DROOPING LEAF and OsETTIN2 genes promote awn development in rice. Toriba T, et al. Plant J, 2014 Feb. PMID 24330191

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in floral meristem determinacy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leaf development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in style development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein DROOPING LEAF
    Names
    LOC_Os03g11600
    Protein CRABS CLAW homolog
    Protein CRC homolog
    drooping leaf

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402089.1 → NP_001389018.1  protein DROOPING LEAF isoform 1

      Status: VALIDATED

      Source sequence(s)
      AB106553, CI717974
      UniProtKB/Swiss-Prot
      Q10Q00, Q76EJ0
      UniProtKB/TrEMBL
      A0A9E8ADA6, A2XDY0

    2. NM_001402090.1 → NP_001389019.1  protein DROOPING LEAF isoform 2

      Status: VALIDATED

      Source sequence(s)
      AB106553, AP014959, CI717974
      UniProtKB/TrEMBL
      A0A8J8YE27, A0A9E8ADA6, B9F669, Q10Q01

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      6041178..6048701
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774589.2 → XP_015630075.1  protein DROOPING LEAF isoform X1

      UniProtKB/TrEMBL
      Q10Q01
      Conserved Domains (1) summary
      pfam04690
      Location:5 → 146
      YABBY; YABBY protein

    2. XM_015774590.2 → XP_015630076.1  protein DROOPING LEAF isoform X2

      UniProtKB/Swiss-Prot
      Q76EJ0
      Conserved Domains (1) summary
      pfam04690
      Location:5 → 144
      YABBY; YABBY protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q76EJ0.1 GenPept UniProtKB/Swiss-Prot:Q76EJ0

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