LOC4338376 coatomer subunit delta-2-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4338376
Gene description: coatomer subunit delta-2-like
Locus tag: OSNPB_050311000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Ubiquitous expression in flower buds (RPKM 53.4), flowers (RPKM 45.8) and 6 other tissues See more
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Genomic context

Location:: chromosome: 5

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	5	NC_089039.1 (14271321..14277171)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	5	NC_029260.1 (14191509..14197309)

Chromosome 5 - NC_089039.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in Golgi localization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of COPI vesicle coat	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: coatomer subunit delta-2

Names: Delta-COP 2; Delta-coat protein 2; LOC_Os05g24594

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001420335.1 → NP_001407264.1 coatomer subunit delta-2

Status: VALIDATED

Source sequence(s)

AK099633, CI256374, CI315112, CI613254

UniProtKB/Swiss-Prot

A0A0P0WKJ9, Q0DJ99

UniProtKB/TrEMBL

B8AWD9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089039.1 Reference ASM3414082v1 Primary Assembly

Range

14271321..14277171

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015784193.3 → XP_015639679.1 coatomer subunit delta-2 isoform X1

UniProtKB/Swiss-Prot

A0A0P0WKJ9, Q0DJ99

UniProtKB/TrEMBL

B8AWD9

Conserved Domains (2) summary

cd09254
Location:283 → 520

AP_delta-COPI_MHD; Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit

cd14830
Location:4 → 133

Delta_COP_N; delta subunit of the F-COPI complex, N-terminal domain