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    LOC100130331 POTE ankyrin domain family, member F pseudogene [ Homo sapiens (human) ]

    Gene ID: 100130331, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC100130331
    Gene description
    POTE ankyrin domain family, member F pseudogene
    See related
    Ensembl:ENSG00000237250
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LOC100130331 in Genome Data Viewer
    Location:
    1q43
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (237862175..237928321)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (237273483..237339549)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (238025475..238091621)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ryanodine receptor 2 Neighboring gene RN7SK pseudogene 195 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:237451188-237452387 Neighboring gene microRNA 4428 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:237753258-237754457 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:237947411-237948610 Neighboring gene NANOG hESC enhancer GRCh37_chr1:238017684-238018245 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:238089816-238090316 Neighboring gene NANOG hESC enhancer GRCh37_chr1:238104193-238104856 Neighboring gene MT-CO1 pseudogene 38 Neighboring gene MT-ND2 pseudogene 27 Neighboring gene zona pellucida glycoprotein 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Clone Names

    • DKFZp434B2115

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027247.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL122093, AL590396
      Related
      ENST00000450451.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      237862175..237928321
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      237273483..237339549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)