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    LOC4327528 probable methyltransferase PMT23 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327528, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4327528
    Gene description
    probable methyltransferase PMT23
    Locus tag
    OSNPB_010828300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 3.9), flower buds (RPKM 2.8) and 6 other tissues See more
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    Genomic context

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    See LOC4327528 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35436696..35441737)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene cinnamoyl-CoA reductase 1 Neighboring gene gamma-interferon-responsive lysosomal thiol protein Neighboring gene protein G1-like7 Neighboring gene thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable methyltransferase PMT23
    Names
    B1088C09.16
    Os01g0828300
    putative early-responsive to dehydration stress protein (ERD3)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      35436696..35441737
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772272.2 → XP_015627758.1  probable methyltransferase PMT23

      UniProtKB/TrEMBL
      A0A0P0V9U8, B8ABM7, B9EU93, Q0JI29, Q5QLT2
      Conserved Domains (2) summary
      PRK12495
      Location:60 → 122
      PRK12495; hypothetical protein; Provisional
      pfam03141
      Location:163 → 661
      Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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