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    LOC101929004 uncharacterized LOC101929004 [ Homo sapiens (human) ]

    Gene ID: 101929004, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC101929004
    Gene description
    uncharacterized LOC101929004
    See related
    Ensembl:ENSG00000288009
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101929004 in Genome Data Viewer
    Location:
    6q15
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (89130250..89146866, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (90338918..90355204, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 336, pseudogene Neighboring gene peptidase M20 domain containing 2 Neighboring gene serine and arginine rich splicing factor 12 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17385 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24819 Neighboring gene Sharpr-MPRA regulatory region 5254 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:89843600-89844238 Neighboring gene NANOG hESC enhancer GRCh37_chr6:89844239-89844876 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17386 Neighboring gene gamma-aminobutyric acid type A receptor subunit rho1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17387 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24820 Neighboring gene gamma-aminobutyric acid type A receptor subunit rho2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17388 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:90007048-90008247 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24822 Neighboring gene tubulin beta 3 class III pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      89130250..89146866 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_942766.4 RNA Sequence

    2. XR_942768.4 RNA Sequence

    3. XR_942765.4 RNA Sequence

    4. XR_942763.4 RNA Sequence

    5. XR_007059672.1 RNA Sequence

    6. XR_942769.4 RNA Sequence

      Related
      ENST00000657573.1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      90338918..90355204 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007076968.1 RNA Sequence

    2. XR_007076966.1 RNA Sequence

    3. XR_007076964.1 RNA Sequence

    4. XR_007076965.1 RNA Sequence

    5. XR_007076967.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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