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    Vmn1r16 vomeronasal 1 receptor 16 [ Mus musculus (house mouse) ]

    Gene ID: 171202, updated on 11-Apr-2024

    Summary

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    Official Symbol
    Vmn1r16provided by MGI
    Official Full Name
    vomeronasal 1 receptor 16provided by MGI
    Primary source
    MGI:MGI:2159465
    See related
    Ensembl:ENSMUSG00000115792 AllianceGenome:MGI:2159465
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    V1rc29
    Summary
    Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See Vmn1r16 in Genome Data Viewer
    Location:
    6 B3; 6 27.82 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (57297724..57300620, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (57320739..57323635, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor, pseudogene 9 Neighboring gene vomeronasal 1 receptor, pseudogene 10 Neighboring gene STARR-seq mESC enhancer starr_16000 Neighboring gene vomeronasal 1 receptor 17 Neighboring gene vomeronasal 1 receptor 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, et al. Nat Neurosci, 2002 Feb. PMID 11802169
    2. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article
    3. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables pheromone binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables pheromone receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within G protein-coupled receptor signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within response to pheromone ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vomeronasal 1 receptor, C29
    Names
    vomernasal 1 receptor Vmn1r16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_134184.2 → NP_598945.2  vomeronasal 1 receptor, C29

      See identical proteins and their annotated locations for NP_598945.2

      Status: VALIDATED

      Source sequence(s)
      AC098739
      Consensus CDS
      CCDS20179.1
      UniProtKB/TrEMBL
      K7N775, Q8R2C5
      Related
      ENSMUSP00000154001.2, ENSMUST00000227168.2
      Conserved Domains (1) summary
      pfam03402
      Location:29 → 293
      V1R; Vomeronasal organ pheromone receptor family, V1R

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      57297724..57300620 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321426.1 → XP_017176915.1  vomeronasal 1 receptor, C29 isoform X1

      UniProtKB/TrEMBL
      Q8R2C5
      Conserved Domains (2) summary
      cd14964
      Location:6 → 28
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:6 → 292
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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