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    LOC4325760 probable calcium-binding protein CML23 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325760, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325760
    Gene description
    probable calcium-binding protein CML23
    Locus tag
    OSNPB_010949300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (42470428..42471449)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41818281..41819412)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein OSB2, chloroplastic Neighboring gene uncharacterized LOC107281494 Neighboring gene phytochromobilin:ferredoxin oxidoreductase, chloroplastic Neighboring gene probable calcium-binding protein CML10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable calcium-binding protein CML23
    Names
    B1147A04.15
    Os01g0949300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      42470428..42471449
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791825.2 → XP_015647311.1  probable calcium-binding protein CML23

      UniProtKB/TrEMBL
      A0A0P0VD25, A2WZ30, Q8RZB7
      Conserved Domains (2) summary
      cd00051
      Location:122 → 185
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl08302
      Location:82 → 147
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    Nucleotide Protein
    Heading Accession and Version

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