U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4332856 protein EARLY RESPONSIVE TO DEHYDRATION 15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332856, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4332856
    Gene description
    protein EARLY RESPONSIVE TO DEHYDRATION 15
    Locus tag
    OSNPB_030353400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ERD15
    Expression
    Broad expression in roots before flowering (RPKM 668.2), leaves after flowering (RPKM 321.2) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4332856 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (13339059..13340336)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (13283145..13284514)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280478 Neighboring gene uncharacterized LOC4332855 Neighboring gene ribosomal RNA-processing protein 17 Neighboring gene protein ABERRANT POLLEN TRANSMISSION 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein EARLY RESPONSIVE TO DEHYDRATION 15
    Names
    17.7 kDa low temperature induced protein
    Os03g0353400

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      13339059..13340336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308575.1 → XP_066164672.1  protein EARLY RESPONSIVE TO DEHYDRATION 15 isoform X1

      UniProtKB/TrEMBL
      Q10LE5

    2. XM_015777331.2 → XP_015632817.1  protein EARLY RESPONSIVE TO DEHYDRATION 15 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XBX4, A2XGR1, A3AHZ3, Q7XXS2
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials