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    LOC4328820 protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328820, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328820
    Gene description
    protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic
    Locus tag
    OSNPB_020234500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1145_E05.7-1; OJ1145_E05.7-2
    Expression
    Broad expression in leaves before flowering (RPKM 54.9), roots after flowering (RPKM 52.3) and 4 other tissues See more
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    Genomic context

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    See LOC4328820 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (7647009..7652367)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (7621896..7627248)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 4-like Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene uncharacterized LOC4328822 Neighboring gene U2 small nuclear ribonucleoprotein A'

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic
    Names
    Os02g0234500
    putative UOS1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      7647009..7652367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767626.3 → XP_015623112.1  protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic

      UniProtKB/TrEMBL
      B8AEK7, B9F4G5, Q6EUK5
      Conserved Domains (4) summary
      PLN03209
      Location:67 → 153
      PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
      COG0702
      Location:116 → 201
      YbjT; Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains [General function prediction only]
      pfam08547
      Location:259 → 417
      CIA30; Complex I intermediate-associated protein 30 (CIA30)
      cl21454
      Location:433 → 540
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    2. XM_015767627.3 → XP_015623113.1  protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic

      UniProtKB/TrEMBL
      B8AEK7, B9F4G5, Q6EUK5
      Conserved Domains (4) summary
      PLN03209
      Location:67 → 153
      PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
      COG0702
      Location:116 → 201
      YbjT; Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains [General function prediction only]
      pfam08547
      Location:259 → 417
      CIA30; Complex I intermediate-associated protein 30 (CIA30)
      cl21454
      Location:433 → 540
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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