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    LOC4339878 WAT1-related protein At3g30340 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339878, updated on 21-Dec-2023

    Summary

    Gene symbol
    LOC4339878
    Gene description
    WAT1-related protein At3g30340
    Locus tag
    OSNPB_060109200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 31.0), flower buds (RPKM 12.7) and 3 other tissues See more
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    Genomic context

    See LOC4339878 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (543044..545780)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene phosphoglycerate mutase-like protein AT74H Neighboring gene probable E3 ubiquitin-protein ligase XERICO Neighboring gene WAT1-related protein At3g30340 Neighboring gene cell division control protein 48 homolog C Neighboring gene haloacid dehalogenase-like hydrolase domain-containing protein Sgpp

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    WAT1-related protein At3g30340
    Names
    OSJNBa0004I20.6
    Os06g0109200
    P0514G12.30
    putative MtN21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      543044..545780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786668.2XP_015642154.1  WAT1-related protein At3g30340

      UniProtKB/TrEMBL
      B8B1J5, B9FR49, Q5VRN3, Q5VS93
      Conserved Domains (2) summary
      COG0697
      Location:13330
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
      pfam00892
      Location:10154
      EamA; EamA-like transporter family