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    LOC4339880 cell division control protein 48 homolog C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339880, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339880
    Gene description
    cell division control protein 48 homolog C
    Locus tag
    OSNPB_060109400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 9.2), flower buds (RPKM 8.5) and 6 other tissues See more
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    Genomic context

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    See LOC4339880 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (706965..711676)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (550890..555635)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene WAT1-related protein At3g30340 Neighboring gene WAT1-related protein At3g30340 Neighboring gene haloacid dehalogenase-like hydrolase domain-containing protein Sgpp Neighboring gene UMP-CMP kinase 1-like Neighboring gene uncharacterized LOC107281213

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables preribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of telomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cell division control protein 48 homolog C
    Names
    OSJNBa0004I20.8
    Os06g0109400
    P0514G12.32
    putative cell survival CED-4-interacting protein MAC-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      706965..711676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788751.3 → XP_015644237.1  cell division control protein 48 homolog C

      UniProtKB/TrEMBL
      B8B1J7, B9FR51, Q0DF83, Q5VRN1
      Conserved Domains (3) summary
      COG0464
      Location:210 → 753
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
      pfam00004
      Location:533 → 662
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam16725
      Location:12 → 69
      Nucleolin_bd; Nucleolin binding domain
    Nucleotide Protein
    Heading Accession and Version

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