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    LOC4350043 probable leucine-rich repeat receptor-like protein kinase At1g35710 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350043, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4350043
    Gene description
    probable leucine-rich repeat receptor-like protein kinase At1g35710
    Locus tag
    OSNPB_110208900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots after flowering (RPKM 26.4), leaves before flowering (RPKM 22.2) and 2 other tissues See more
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    Genomic context

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    See LOC4350043 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (5593069..5603071, complement)

    Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene F-box protein At4g22280-like Neighboring gene uncharacterized LOC4350044 Neighboring gene F-box protein At4g22280 Neighboring gene F-box protein At5g03100

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable leucine-rich repeat receptor-like protein kinase At1g35710
    Names
    Os11g0208900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

      Range
      5593069..5603071 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761582.1 → XP_015617068.1  probable leucine-rich repeat receptor-like protein kinase At1g35710 isoform X1

      UniProtKB/TrEMBL
      Q0ITX8, Q2R915, Q9LLN7
      Conserved Domains (2) summary
      PLN00113
      Location:40 → 1056
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:109 → 132
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_026021227.1 → XP_025877012.1  probable leucine-rich repeat receptor-like protein kinase At1g35710 isoform X2

      UniProtKB/TrEMBL
      A3C9L7
      Conserved Domains (2) summary
      sd00033
      Location:109 → 132
      LRR_RI; leucine-rich repeat [structural motif]
      cl26793
      Location:40 → 954
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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