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    LOC4339882 UMP-CMP kinase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339882, updated on 19-Jun-2024

    Summary

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    Gene symbol
    LOC4339882
    Gene description
    UMP-CMP kinase 1-like
    Locus tag
    OSNPB_060109600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_19856
    Expression
    Broad expression in roots before flowering (RPKM 40.1), mature seeds (RPKM 9.2) and 5 other tissues See more
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    Genomic context

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    See LOC4339882 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (564352..567685)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene WAT1-related protein At3g30340 Neighboring gene cell division control protein 48 homolog C Neighboring gene haloacid dehalogenase-like hydrolase domain-containing protein Sgpp Neighboring gene uncharacterized LOC107281213 Neighboring gene uncharacterized LOC107281214

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables (d)CMP kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables UMP kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 'de novo' pyrimidine nucleobase biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in CDP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in UDP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UMP-CMP kinase 1; uMP-CMP kinase 1
    Names
    CK 1
    Deoxycytidylate kinase 1
    LOC_Os06g02000
    OSJNBa0004I20.14
    P0514G12.38
    UMP/CMPK 1
    Uridine monophosphate/cytidine monophosphate kinase 1
    dCMP kinase 1
    putative Uridylate kinase
    XP_015641833.1
    XP_015641834.1
    XP_015641835.1
    XP_015641836.1
    XP_015641837.1
    XP_015641838.1
    XP_025881770.1
    XP_025881771.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402680.1 → NP_001389609.1  uMP-CMP kinase 1

      Status: VALIDATED

      Source sequence(s)
      AK066989, AP014962
      UniProtKB/Swiss-Prot
      A0A0P0WRX7, Q5VRN0
      UniProtKB/TrEMBL
      B8B1J8

    2. NM_001402681.1 → NP_001389610.1  uMP-CMP kinase 1

      Status: VALIDATED

      Source sequence(s)
      AK066989, AP014962, CI347949, CI640256
      UniProtKB/Swiss-Prot
      A0A0P0WRX7, Q5VRN0
      UniProtKB/TrEMBL
      B8B1J8

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      564352..567685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025986.1 → XP_025881771.1  UMP-CMP kinase 1 isoform X1

      Conserved Domains (1) summary
      cl27057
      Location:21 → 199
      ADK; Adenylate kinase

    2. XM_015786349.2 → XP_015641835.1  UMP-CMP kinase 1 isoform X1

      Conserved Domains (1) summary
      cl27057
      Location:21 → 199
      ADK; Adenylate kinase

    3. XM_026025985.1 → XP_025881770.1  UMP-CMP kinase 1 isoform X1

      Conserved Domains (1) summary
      cl27057
      Location:21 → 199
      ADK; Adenylate kinase

    4. XM_015786347.2 → XP_015641833.1  UMP-CMP kinase 1 isoform X1

      Conserved Domains (1) summary
      cl27057
      Location:21 → 199
      ADK; Adenylate kinase

    5. XM_015786351.2 → XP_015641837.1  UMP-CMP kinase 1 isoform X2

      UniProtKB/Swiss-Prot
      A0A0P0WRX7, Q5VRN0
      UniProtKB/TrEMBL
      B8B1J8
      Conserved Domains (2) summary
      cd01428
      Location:21 → 190
      ADK; Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for ...
      TIGR01359
      Location:21 → 199
      UMP_CMP_kin_fam; UMP-CMP kinase family

    6. XM_015786352.2 → XP_015641838.1  UMP-CMP kinase 1 isoform X2

      UniProtKB/Swiss-Prot
      Q5VRN0
      Conserved Domains (2) summary
      cd01428
      Location:21 → 190
      ADK; Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for ...
      TIGR01359
      Location:21 → 199
      UMP_CMP_kin_fam; UMP-CMP kinase family

    7. XM_015786348.2 → XP_015641834.1  UMP-CMP kinase 1 isoform X1

      Conserved Domains (1) summary
      cl27057
      Location:21 → 199
      ADK; Adenylate kinase

    8. XM_015786350.2 → XP_015641836.1  UMP-CMP kinase 1 isoform X1

      Conserved Domains (1) summary
      cl27057
      Location:21 → 199
      ADK; Adenylate kinase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5VRN0.1 GenPept UniProtKB/Swiss-Prot:Q5VRN0

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