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    LOC4329630 serine/threonine-protein kinase SAPK6-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329630, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4329630
    Gene description
    serine/threonine-protein kinase SAPK6-like
    Locus tag
    OSNPB_020551100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RK1; SAPK6; OsSAPK6; OsJ_07099; OJ1004_H01.2
    Expression
    Broad expression in leaves before flowering (RPKM 82.5), roots after flowering (RPKM 79.0) and 6 other tissues See more
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    Genomic context

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    See LOC4329630 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21225077..21230104, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (20746352..20751374, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene exosome complex component RRP45A Neighboring gene protein FAR1-RELATED SEQUENCE 5 Neighboring gene ammonium transporter 3 member 3-like Neighboring gene uncharacterized LOC4329631 Neighboring gene transfer RNA glutamine (anticodon UUG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling. Chae MJ, et al. Plant Mol Biol, 2007 Jan. PMID 16977424
    2. Differential activation of the rice sucrose nonfermenting1-related protein kinase2 family by hyperosmotic stress and abscisic acid. Kobayashi Y, et al. Plant Cell, 2004 May. PMID 15084714, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase SAPK6
    Names
    LOC_Os02g34600
    Osmotic stress/abscisic acid-activated protein kinase 6
    P0451A10.35
    putative osmotic stress-activated protein kinase
    serine-threonine protein kinase
    stress-activated protein kinase 6
    NP_001388802.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401873.1 → NP_001388802.1  serine/threonine-protein kinase SAPK6

      Status: VALIDATED

      Source sequence(s)
      AB125307, CI216606, CI658567
      UniProtKB/Swiss-Prot
      Q0E0H5, Q6ZI44
      UniProtKB/TrEMBL
      A0A0U1XNH7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21225077..21230104 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ZI44.1 GenPept UniProtKB/Swiss-Prot:Q6ZI44

    Gene LinkOut

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