U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC00240 long intergenic non-protein coding RNA 240 [ Homo sapiens (human) ]

    Gene ID: 100133205, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00240provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 240provided by HGNC
    Primary source
    HGNC:HGNC:18772
    See related
    Ensembl:ENSG00000224843 AllianceGenome:HGNC:18772
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C6orf41; NCRNA00240; bA373D17.1
    Expression
    Broad expression in testis (RPKM 1.1), thyroid (RPKM 0.8) and 21 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC00240 in Genome Data Viewer
    Location:
    6p22.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (26956993..27023974)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (26825372..26892470)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (26924772..26991753)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901290 Neighboring gene tRNA-Ala (anticodon AGC) 14-2 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:26845091-26845270 Neighboring gene POM121 transmembrane nucleoporin like 6, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:26853600-26854455 Neighboring gene GUSB pseudogene 2 Neighboring gene NANOG hESC enhancer GRCh37_chr6:26876271-26876881 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:26924432-26925130 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24256 Neighboring gene tRNA-Ile (anticodon TAT) 2-2 Neighboring gene LINC00240 antisense RNA regulating promoter methylation Neighboring gene vomeronasal 1 receptor 12, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24257 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24258 Neighboring gene vomeronasal 1 receptor 13 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026775.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI028608, BC031943, BX647648
      Related
      ENST00000669756.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      26956993..27023974
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      26825372..26892470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)