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    LOC4338844 amino acid permease 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338844, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4338844
    Gene description
    amino acid permease 3
    Locus tag
    OSNPB_050424000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 27.4), roots after flowering (RPKM 15.3) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (20881581..20885278)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (20777601..20781286)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene MADS-box transcription factor 4-like Neighboring gene probable receptor-like protein kinase At1g11050 Neighboring gene cytochrome P450 71A1 Neighboring gene copper transporter 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amino acid permease 3
    Names
    Os05g0424000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      20881581..20885278
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025802.2 → XP_025881587.1  amino acid permease 3 isoform X1

      Conserved Domains (1) summary
      pfam01490
      Location:88 → 530
      Aa_trans; Transmembrane amino acid transporter protein

    2. XM_015781986.3 → XP_015637472.1  amino acid permease 3 isoform X2

      UniProtKB/TrEMBL
      A2Y4U7, B9FIW7, Q60EP1
      Conserved Domains (1) summary
      pfam01490
      Location:42 → 484
      Aa_trans; Transmembrane amino acid transporter protein
    Nucleotide Protein
    Heading Accession and Version

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