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    LOC4328203 E3 ubiquitin-protein ligase MARCH2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328203, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4328203
    Gene description
    E3 ubiquitin-protein ligase MARCH2
    Locus tag
    OSNPB_020132300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1007_D04.30
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 15.1), roots after flowering (RPKM 14.2) and 6 other tissues See more
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    Genomic context

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    See LOC4328203 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1680213..1689730)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g17140 Neighboring gene uncharacterized LOC4328202 Neighboring gene bZIP transcription factor 11 Neighboring gene pentatricopeptide repeat-containing protein At4g04790, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase MARCH2; uncharacterized protein LOC4328203
    Names
    E3 ubiquitin-protein ligase MARCH3
    Os02g0132300
    zinc finger (C3HC4-type RING finger) protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1680213..1689730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771359.2 → XP_015626845.1  E3 ubiquitin-protein ligase MARCH2 isoform X4

      UniProtKB/TrEMBL
      A0A0P0VEE5, Q6ZG80
      Conserved Domains (2) summary
      COG5183
      Location:85 → 205
      SSM4; E3 ubiquitin-protein ligase DOA10 [Posttranslational modification, protein turnover, chaperones]
      cd16495
      Location:85 → 133
      RING_CH-C4HC3_MARCH; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH proteins (MARCH)

    2. XM_015771354.2 → XP_015626840.1  E3 ubiquitin-protein ligase MARCH2 isoform X1

      UniProtKB/TrEMBL
      B8AH24, B9F2A6
      Conserved Domains (2) summary
      COG5183
      Location:158 → 278
      SSM4; E3 ubiquitin-protein ligase DOA10 [Posttranslational modification, protein turnover, chaperones]
      cd16495
      Location:158 → 206
      RING_CH-C4HC3_MARCH; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH proteins (MARCH)

    3. XM_015771356.2 → XP_015626842.1  uncharacterized protein LOC4328203 isoform X3

      Conserved Domains (1) summary
      smart00744
      Location:157 → 206
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

    4. XM_015771355.2 → XP_015626841.1  E3 ubiquitin-protein ligase MARCH2 isoform X2

      Conserved Domains (1) summary
      smart00744
      Location:157 → 206
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

    RNA

    1. XR_001543796.1 RNA Sequence

    2. XR_001543794.2 RNA Sequence

    3. XR_001543793.2 RNA Sequence

    4. XR_003240763.1 RNA Sequence

    5. XR_003240761.1 RNA Sequence

    6. XR_001543795.2 RNA Sequence

    7. XR_003240762.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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