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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000071.7 Reference GRCm39 C57BL/6J
- Range
-
76357715..76452675 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017320649.3 → XP_017176138.1 circadian locomoter output cycles protein kaput isoform X2
- Conserved Domains (3) summary
-
- pfam00989
Location:109 → 177
- PAS; PAS fold
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
- cd19734
Location:29 → 89
- bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
-
XM_017320651.3 → XP_017176140.1 circadian locomoter output cycles protein kaput isoform X4
- Conserved Domains (3) summary
-
- pfam00989
Location:109 → 177
- PAS; PAS fold
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
- cd19734
Location:29 → 89
- bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
-
XM_017320650.3 → XP_017176139.1 circadian locomoter output cycles protein kaput isoform X3
- Conserved Domains (3) summary
-
- pfam00989
Location:109 → 177
- PAS; PAS fold
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
- cd19734
Location:29 → 89
- bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
-
XM_017320648.3 → XP_017176137.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
-
O08785
- UniProtKB/TrEMBL
-
Q6ZQD6
- Conserved Domains (3) summary
-
- pfam00989
Location:109 → 177
- PAS; PAS fold
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
- cd19734
Location:29 → 89
- bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
-
XM_036164771.1 → XP_036020664.1 circadian locomoter output cycles protein kaput isoform X5
- UniProtKB/TrEMBL
-
Q6ZQD6
- Conserved Domains (2) summary
-
- cd00130
Location:3 → 91
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam14598
Location:149 → 252
- PAS_11; PAS domain
-
XM_030254101.2 → XP_030109961.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
-
O08785
- UniProtKB/TrEMBL
-
Q6ZQD6
- Conserved Domains (3) summary
-
- pfam00989
Location:109 → 177
- PAS; PAS fold
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
- cd19734
Location:29 → 89
- bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
-
XM_030254103.2 → XP_030109963.1 circadian locomoter output cycles protein kaput isoform X3
- Conserved Domains (3) summary
-
- pfam00989
Location:109 → 177
- PAS; PAS fold
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
- cd19734
Location:29 → 89
- bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
-
XM_030254102.2 → XP_030109962.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
-
O08785
- UniProtKB/TrEMBL
-
Q6ZQD6
- Conserved Domains (3) summary
-
- pfam00989
Location:109 → 177
- PAS; PAS fold
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
- cd19734
Location:29 → 89
- bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
-
XM_011249402.3 → XP_011247704.1 circadian locomoter output cycles protein kaput isoform X5
- UniProtKB/TrEMBL
-
Q6ZQD6
- Conserved Domains (2) summary
-
- cd00130
Location:3 → 91
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam14598
Location:149 → 252
- PAS_11; PAS domain
RNA
-
XR_001784602.3 RNA Sequence
-
XR_001784601.3 RNA Sequence
-
XR_004942433.1 RNA Sequence