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PMC Full-Text Search Results

Items: 1 to 20 of 112

1.
Anaerobic degradation of organic carbon supports uncultured microbial populations in estuarine sediments
Tiantian Yu, Weichao Wu, Wenyue Liang, Yinzhao Wang, Jialin Hou, Yunru Chen, Marcus Elvert, Kai-Uwe Hinrichs, Fengping Wang
Microbiome. 2023; 11: 81. Published online 2023 Apr 20. doi: 10.1186/s40168-023-01531-z
PMCID:
PMC10116835
AbstractArticlePDF–2.3M
2.
All DACs in a Row: Domain Architectures of Bacterial and Archaeal Diadenylate Cyclases
Michael Y. Galperin
J Bacteriol. 2023 Apr; 205(4): e00023-23. Published online 2023 Apr 6. doi: 10.1128/jb.00023-23
PMCID:
PMC10127676
AbstractArticlePDF–1.3M
3.
Editorial: The methane moment - Cross-boundary significance of methanogens: Preface
Zhe Lyu, Amelia-Elena Rotaru, Mark Pimentel, Cui-Jing Zhang, Simon K.-M. R. Rittmann
Front Microbiol. 2022; 13: 1055494. Published online 2022 Nov 14. doi: 10.3389/fmicb.2022.1055494
PMCID:
PMC9731359
ArticlePDF–213K
4.
Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups
Raphaël Méheust, Cindy J. Castelle, Alexander L. Jaffe, Jillian F. Banfield
BMC Biol. 2022; 20: 154. Published online 2022 Jul 5. doi: 10.1186/s12915-022-01348-6
PMCID:
PMC9258230
AbstractArticlePDF–3.1M
5.
An estimate of the deepest branches of the tree of life from ancient vertically evolving genes
Edmund RR Moody, Tara A Mahendrarajah, Nina Dombrowski, James W Clark, Celine Petitjean, Pierre Offre, Gergely J Szöllősi, Anja Spang, Tom A Williams
eLife. 2022; 11: e66695. Published online 2022 Feb 22. doi: 10.7554/eLife.66695
PMCID:
PMC8890751
AbstractArticlePDF–1.5M
6.
The origin and radiation of the phosphoprotein phosphatase (PPP) enzymes of Eukaryotes
David Kerk, Jordan F. Mattice, Mario E. Valdés-Tresanco, Sergei Yu Noskov, Kenneth K.-S. Ng, Greg B. Moorhead
Sci Rep. 2021; 11: 13681. Published online 2021 Jul 1. doi: 10.1038/s41598-021-93206-8
PMCID:
PMC8249667
AbstractArticlePDF–1.7M
7.
Procaryotic Diversity and Hydrogenotrophic Methanogenesis in an Alkaline Spring (La Crouen, New Caledonia)
Marianne Quéméneur, Nan Mei, Christophe Monnin, Anne Postec, Laura Wils, Manon Bartoli, Sophie Guasco, Bernard Pelletier, Gael Erauso
Microorganisms. 2021 Jul; 9(7): 1360. Published online 2021 Jun 23. doi: 10.3390/microorganisms9071360
PMCID:
PMC8307142
AbstractArticlePDF–6.6M
8.
Helarchaeota and co-occurring sulfate-reducing bacteria in subseafloor sediments from the Costa Rica Margin
Rui Zhao, Jennifer F. Biddle
ISME Commun. 2021; 1: 25. Published online 2021 Jun 17. doi: 10.1038/s43705-021-00027-x
PMCID:
PMC9723726
AbstractArticlePDF–3.1M
9.
G-Quadruplex Structures in Bacteria: Biological Relevance and Potential as an Antimicrobial Target
Puja Yadav, Nayun Kim, Monika Kumari, Shalini Verma, Tarun Kumar Sharma, Vikas Yadav, Amit Kumar
J Bacteriol. 2021 Jul; 203(13): e00577-20. Prepublished online 2021 Mar 1. Published online 2021 Jun 8. doi: 10.1128/JB.00577-20
PMCID:
PMC8315935
AbstractArticlePDF–1.6M
10.
AC2: An Efficient Protein Sequence Compression Tool Using Artificial Neural Networks and Cache-Hash Models
Milton Silva, Diogo Pratas, Armando J. Pinho
Entropy (Basel) 2021 May; 23(5): 530. Published online 2021 Apr 26. doi: 10.3390/e23050530
PMCID:
PMC8146440
AbstractArticlePDF–1.4M
11.
The Asgard Archaeal-Unique Contribution to Protein Families of the Eukaryotic Common Ancestor Was 0.3%
Michael Knopp, Simon Stockhorst, Mark van der Giezen, Sriram G Garg, Sven B Gould
Genome Biol Evol. 2021 Jun; 13(6): evab085. Published online 2021 Apr 23. doi: 10.1093/gbe/evab085
PMCID:
PMC8220308
AbstractArticlePDF–1.1M
12.
Hikarchaeia demonstrate an intermediate stage in the methanogen-to-halophile transition
Joran Martijn, Max E. Schön, Anders E. Lind, Julian Vosseberg, Tom A. Williams, Anja Spang, Thijs J. G. Ettema
Nat Commun. 2020; 11: 5490. Published online 2020 Oct 30. doi: 10.1038/s41467-020-19200-2
PMCID:
PMC7599335
AbstractArticlePDF–949K
13.
Genomic and transcriptomic insights into methanogenesis potential of novel methanogens from mangrove sediments
Cui-Jing Zhang, Jie Pan, Yang Liu, Chang-Hai Duan, Meng Li
Microbiome. 2020; 8: 94. Published online 2020 Jun 17. doi: 10.1186/s40168-020-00876-z
PMCID:
PMC7302380
AbstractArticlePDF–1.6M
14.
Comparative study on archaeal diversity in the sediments of two urban landscape water bodies
Yuxin Wang, Chaonan Wang
PLoS One. 2020; 15(2): e0229097. Published online 2020 Feb 18. doi: 10.1371/journal.pone.0229097
PMCID:
PMC7028264
AbstractArticlePDF–1.8M
15.
Metabolic potentials of archaeal lineages resolved from metagenomes of deep Costa Rica sediments
Ibrahim F. Farag, Jennifer F. Biddle, Rui Zhao, Amanda J. Martino, Christopher H. House, Rosa I. León-Zayas
ISME J. 2020 Jun; 14(6): 1345–1358. Published online 2020 Feb 17. doi: 10.1038/s41396-020-0615-5
PMCID:
PMC7242443
AbstractArticlePDF–3.5M
16.
Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of Hydrothermarchaeota in Hydrothermal Sediment
Zhichao Zhou, Yang Liu, Wei Xu, Jie Pan, Zhu-Hua Luo, Meng Li
mSystems. 2020 Jan-Feb; 5(1): e00795-19. Published online 2020 Jan 7. doi: 10.1128/mSystems.00795-19
Correction in:
mSystems. 2022 Sep-Oct; 7(5): e00750-22.
PMCID:
PMC6946796
AbstractArticlePDF–7.6M
17.
Ultradeep Microbial Communities at 4.4 km within Crystalline Bedrock: Implications for Habitability in a Planetary Context
Lotta Purkamo, Riikka Kietäväinen, Maija Nuppunen-Puputti, Malin Bomberg, Claire Cousins
Life (Basel) 2020 Jan; 10(1): 2. Published online 2020 Jan 4. doi: 10.3390/life10010002
PMCID:
PMC7175195
AbstractArticlePDF–1.9M
18.
Metabolic Potential of As-yet-uncultured Archaeal Lineages of Candidatus Hydrothermarchaeota Thriving in Deep-sea Metal Sulfide Deposits
Shingo Kato, Shinsaku Nakano, Mariko Kouduka, Miho Hirai, Katsuhiko Suzuki, Takashi Itoh, Moriya Ohkuma, Yohey Suzuki
Microbes Environ. 2019 Sep; 34(3): 293–303. Published online 2019 Aug 3. doi: 10.1264/jsme2.ME19021
PMCID:
PMC6759336
AbstractArticlePDF–1.3M
19.
Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens
Bojk A. Berghuis, Feiqiao Brian Yu, Frederik Schulz, Paul C. Blainey, Tanja Woyke, Stephen R. Quake
Proc Natl Acad Sci U S A. 2019 Mar 12; 116(11): 5037–5044. Published online 2019 Feb 27. doi: 10.1073/pnas.1815631116
PMCID:
PMC6421429
AbstractArticlePDF–890K
20.
Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake
Antti J Rissanen, Sari Peura, Promise A Mpamah, Sami Taipale, Marja Tiirola, Christina Biasi, Anita Mäki, Hannu Nykänen
FEMS Microbiol Lett. 2019 Mar; 366(5): fnz044. Published online 2019 Feb 26. doi: 10.1093/femsle/fnz044
PMCID:
PMC6476745
AbstractArticlePDF–2.5M

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