txid2022738[Organism:exp] - PMC

Mart Krupovic, Dann Turner, Vera Morozova, Mike Dyall-Smith, Hanna M. Oksanen, Rob Edwards, Bas E. Dutilh, Susan M. Lehman, Alejandro Reyes, Diana P. Baquero, Matthew B. Sullivan, Jumpei Uchiyama, Jesca Nakavuma, Jakub Barylski, Mark J. Young, Shishen Du, Poliane Alfenas-Zerbini, Alla Kushkina, Andrew M. Kropinski, Ipek Kurtböke, J. Rodney Brister, Cédric Lood, B. L. Sarkar, Tong Yigang, Ying Liu, Li Huang, Johannes Wittmann, Nina Chanishvili, Leonardo J. van Zyl, Janis Rumnieks, Tomohiro Mochizuki, Matti Jalasvuori, Ramy K. Aziz, Małgorzata Łobocka, Kenneth M. Stedman, Andrey N. Shkoporov, Annika Gillis, Xu Peng, François Enault, Petar Knezevic, Rob Lavigne, Sung-Keun Rhee, Virginija Cvirkaite-Krupovic, Cristina Moraru, Andrea I. Moreno Switt, Minna M. Poranen, Andrew Millard, David Prangishvili, Evelien M. Adriaenssens

Arch Virol. 2021; 166(11): 3239–3244. Published online 2021 Aug 21. doi: 10.1007/s00705-021-05205-9

PMCID:: PMC8497307

Abstract Article PDF–546K

Select item 80662744.

Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics

Tatyana V. Butina, Yurij S. Bukin, Ivan S. Petrushin, Alexey E. Tupikin, Marsel R. Kabilov, Sergey I. Belikov

Microorganisms. 2021 Apr; 9(4): 760. Published online 2021 Apr 5. doi: 10.3390/microorganisms9040760

PMCID:: PMC8066274

Abstract Article PDF–5.7M

Select item 71892735.

Structure of a filamentous virus uncovers familial ties within the archaeal virosphere

Fengbin Wang, Diana P Baquero, Zhangli Su, Tomasz Osinski, David Prangishvili, Edward H Egelman, Mart Krupovic

Virus Evol. 2020 Jan; 6(1): veaa023. Published online 2020 Apr 29. doi: 10.1093/ve/veaa023

PMCID:: PMC7189273

Abstract Article PDF–530K

Select item 73053116.

New virus isolates from Italian hydrothermal environments underscore the biogeographic pattern in archaeal virus communities

Diana P. Baquero, Patrizia Contursi, Monica Piochi, Simonetta Bartolucci, Ying Liu, Virginija Cvirkaite-Krupovic, David Prangishvili, Mart Krupovic

ISME J. 2020 Jul; 14(7): 1821–1833. Published online 2020 Apr 22. doi: 10.1038/s41396-020-0653-z

PMCID:: PMC7305311

Abstract Article PDF–1.9M

Select item 61056697.

Structural conservation in a membrane-enveloped filamentous virus infecting a hyperthermophilic acidophile

Ying Liu, Tomasz Osinski, Fengbin Wang, Mart Krupovic, Stefan Schouten, Peter Kasson, David Prangishvili, Edward H. Egelman

Nat Commun. 2018; 9: 3360. Published online 2018 Aug 22. doi: 10.1038/s41467-018-05684-6

PMCID:: PMC6105669

Abstract Article PDF–5.0M

Select item 71498808.

Virion Structure, Genome Organization, and Taxonomy of Viruses

Gustavo Fermin

Viruses. 2018 : 17–54. Published online 2018 Mar 30. doi: 10.1016/B978-0-12-811257-1.00002-4

PMCID:: PMC7149880

Abstract Article PDF–2.2M

Select item 58097459.

Novel Sulfolobus Virus with an Exceptional Capsid Architecture

Haina Wang, Zhenqian Guo, Hongli Feng, Yufei Chen, Xiuqiang Chen, Zhimeng Li, Walter Hernández-Ascencio, Xin Dai, Zhenfeng Zhang, Xiaowei Zheng, Marielos Mora-López, Yu Fu, Chuanlun Zhang, Ping Zhu, Li Huang

J Virol. 2018 Mar 1; 92(5): e01727-17. Prepublished online 2017 Dec 6. Published online 2018 Feb 12. doi: 10.1128/JVI.01727-17

PMCID:: PMC5809745

Abstract Article PDF–4.9M

Select item 570456110.

Phylogenomics of Cas4 family nucleases

Sanjarbek Hudaiberdiev, Sergey Shmakov, Yuri I. Wolf, Michael P. Terns, Kira S. Makarova, Eugene V. Koonin

BMC Evol Biol. 2017; 17: 232. Published online 2017 Nov 28. doi: 10.1186/s12862-017-1081-1

PMCID:: PMC5704561

Abstract Article PDF–2.3M

Select item 556966111.

Structure and mechanisms of viral transcription factors in archaea

Carol Sheppard, Finn Werner

Extremophiles. 2017; 21(5): 829–838. Published online 2017 Jul 5. doi: 10.1007/s00792-017-0951-1

PMCID:: PMC5569661

Abstract Article PDF–1.6M

Select item 512636312.

Bipartite Network Analysis of the Archaeal Virosphere: Evolutionary Connections between Viruses and Capsidless Mobile Elements

Jaime Iranzo, Eugene V. Koonin, David Prangishvili, Mart Krupovic

J Virol. 2016 Dec 15; 90(24): 11043–11055. Prepublished online 2016 Sep 28. Published online 2016 Nov 28. doi: 10.1128/JVI.01622-16

PMCID:: PMC5126363

Abstract Article PDF–1.1M

Select item 462563913.

Evolution of an archaeal virus nucleocapsid protein from the CRISPR-associated Cas4 nuclease

Mart Krupovic, Virginija Cvirkaite-Krupovic, David Prangishvili, Eugene V. Koonin

Biol Direct. 2015; 10: 65. Published online 2015 Oct 29. doi: 10.1186/s13062-015-0093-2

PMCID:: PMC4625639

Abstract Article PDF–1.7M

Select item 334720914.

Characterization of the CRISPR/Cas Subtype I-A System of the Hyperthermophilic Crenarchaeon Thermoproteus tenax

André Plagens, Britta Tjaden, Anna Hagemann, Lennart Randau, Reinhard Hensel

J Bacteriol. 2012 May; 194(10): 2491–2500. doi: 10.1128/JB.00206-12

PMCID:: PMC3347209

Abstract Article PDF–1.4M

Select item 715014815.

Taxonomy, Classification and Nomenclature of Viruses

C.M. Fauquet

Encyclopedia of Virology. 2008 : 9–23. Published online 2008 Jul 30. doi: 10.1016/B978-012374410-4.00509-4

PMCID:: PMC7150148

Abstract Article PDF–250K

Select item 1079104516.

Archaeal virus entry and egress

Bastiaan P Kuiper, Anna M C Schöntag, Hanna M Oksanen, Bertram Daum, Tessa E F Quax

Microlife. 2024; 5: uqad048. Published online 2024 Jan 3. doi: 10.1093/femsml/uqad048

PMCID:: PMC10791045

Abstract Article PDF–1.4M

Select item 1054113017.

Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components

Changhai Duan, Yang Liu, Ying Liu, Lirui Liu, Mingwei Cai, Rui Zhang, Qinglu Zeng, Eugene V. Koonin, Mart Krupovic, Meng Li

Version 2. bioRxiv. Preprint. 2023 Aug 31. doi: 10.1101/2023.08.24.554615

Published in:: ISME Commun. 2024 Jan; 4(1): ycad011.

PMCID:: PMC10541130

Abstract Article PDF–6.4M

Select item 1049244418.

Viral community composition of hypersaline lakes

Callum Le Lay, Joshua N Hamm, Timothy J Williams, Mang Shi, Ricardo Cavicchioli, Edward C Holmes

Virus Evol. 2023; 9(2): vead057. Published online 2023 Aug 30. doi: 10.1093/ve/vead057

PMCID:: PMC10492444

Abstract Article PDF–2.8M

Select item 1051634519.

Zero-shot-capable identification of phage–host relationships with whole-genome sequence representation by contrastive learning

Yao-zhong Zhang, Yunjie Liu, Zeheng Bai, Kosuke Fujimoto, Satoshi Uematsu, Seiya Imoto

Brief Bioinform. 2023 Sep; 24(5): bbad239. Published online 2023 Jul 18. doi: 10.1093/bib/bbad239

PMCID:: PMC10516345

Abstract Article PDF–2.1M

Select item 960845720.

Genomics, Transcriptomics, and Proteomics of SSV1 and Related Fusellovirus: A Minireview

Martina Aulitto, Laura Martinez-Alvarez, Salvatore Fusco, Qunxin She, Simonetta Bartolucci, Xu Peng, Patrizia Contursi

Viruses. 2022 Oct; 14(10): 2082. Published online 2022 Sep 20. doi: 10.3390/v14102082

PMCID:: PMC9608457

Abstract Article PDF–3.0M

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