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Select item 91881261.

In-depth characterization of denitrifier communities across different soil ecosystems in the tundra

Igor S. Pessi, Sirja Viitamäki, Anna-Maria Virkkala, Eeva Eronen-Rasimus, Tom O. Delmont, Maija E. Marushchak, Miska Luoto, Jenni Hultman

Environ Microbiome. 2022; 17: 30. Published online 2022 Jun 11. doi: 10.1186/s40793-022-00424-2

PMCID:: PMC9188126

Abstract Article PDF–7.9M

Select item 88417762.

Comparative Genomics Reveal the Animal-Associated Features of the Acanthopleuribacteraceae Bacteria, and Description of Sulfidibacter corallicola gen. nov., sp., nov.

Guanghua Wang, Yuanjin Li, Jianfeng Liu, Biao Chen, Hongfei Su, Jiayuan Liang, Wen Huang, Kefu Yu

Front Microbiol. 2022; 13: 778535. Published online 2022 Jan 31. doi: 10.3389/fmicb.2022.778535

PMCID:: PMC8841776

Abstract Article PDF–1.8M

Select item 80859883.

Enzyme biotechnology development for treating polymers in hydraulic fracturing operations

Gabrielle Scheffer, Carolina Berdugo‐Clavijo, Arindom Sen, Lisa M. Gieg

Microb Biotechnol. 2021 May; 14(3): 953–966. Published online 2021 Jan 11. doi: 10.1111/1751-7915.13727

PMCID:: PMC8085988

Abstract Article PDF–997K

Select item 74946794.

Seasonal Ely Copper Mine Superfund site shotgun metagenomic and metatranscriptomic data analysis

Lesley-Ann Giddings, George Chlipala, Heather Driscoll, Kieran Bhave, Kevin Kunstman, Stefan Green, Katherine Morillo, Holly Peterson, Mark Maienschein-Cline

Data Brief. 2020 Oct; 32: 106282. Published online 2020 Sep 8. doi: 10.1016/j.dib.2020.106282

PMCID:: PMC7494679

Abstract Article PDF–3.3M

Select item 64517445.

Evolution of endonuclease IV protein family: an in silico analysis

Swarna Kanchan, Parva Sharma, Shibasish Chowdhury

3 Biotech. 2019 May; 9(5): 168. Published online 2019 Apr 6. doi: 10.1007/s13205-019-1696-6

PMCID:: PMC6451744

Abstract Article PDF–2.1M

Select item 54629606.

Pheno- and Genotyping of Hopanoid Production in Acidobacteria

Jaap S. Sinninghe Damsté, W. Irene C. Rijpstra, Svetlana N. Dedysh, Bärbel U. Foesel, Laura Villanueva

Front Microbiol. 2017; 8: 968. Published online 2017 Jun 8. doi: 10.3389/fmicb.2017.00968

PMCID:: PMC5462960

Abstract Article PDF–5.9M

Select item 49113527.

The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing

Vera Thiel, Jason M. Wood, Millie T. Olsen, Marcus Tank, Christian G. Klatt, David M. Ward, Donald A. Bryant

Front Microbiol. 2016; 7: 919. Published online 2016 Jun 17. doi: 10.3389/fmicb.2016.00919

PMCID:: PMC4911352

Abstract Article PDF–6.7M

Select item 45649708.

Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011

Brandon M. Satinsky, Caroline S. Fortunato, Mary Doherty, Christa B. Smith, Shalabh Sharma, Nicholas D. Ward, Alex V. Krusche, Patricia L. Yager, Jeffrey E. Richey, Mary Ann Moran, Byron C. Crump

Microbiome. 2015; 3: 39. Published online 2015 Sep 10. doi: 10.1186/s40168-015-0099-0

PMCID:: PMC4564970

Abstract Article PDF–857K

Select item 41229449.

The Molecular Evolution of the Q_o Motif

Wei-Chun Kao, Carola Hunte

Genome Biol Evol. 2014 Jul; 6(7): 1894–1910. Published online 2014 Jul 22. doi: 10.1093/gbe/evu147

PMCID:: PMC4122944

Abstract Article PDF–729K

Select item 407268610.

The First Complete Genome Sequence of the Class Fimbriimonadia in the Phylum Armatimonadetes

Zi-Ye Hu, Yue-Zhu Wang, Wan-Taek Im, Sheng-Yue Wang, Guo-Ping Zhao, Hua-Jun Zheng, Zhe-Xue Quan

PLoS One. 2014; 9(6): e100794. Published online 2014 Jun 26. doi: 10.1371/journal.pone.0100794

PMCID:: PMC4072686

Abstract Article PDF–953K

Select item 410352111.

The Combination of Functional Metagenomics and an Oil-Fed Enrichment Strategy Revealed the Phylogenetic Diversity of Lipolytic Bacteria Overlooked by the Cultivation-Based Method

Takashi Narihiro, Aya Suzuki, Kazuaki Yoshimune, Tomoyuki Hori, Tamotsu Hoshino, Isao Yumoto, Atsushi Yokota, Nobutada Kimura, Yoichi Kamagata

Microbes Environ. 2014 Jun; 29(2): 154–161. Published online 2014 May 23. doi: 10.1264/jsme2.ME14002

PMCID:: PMC4103521

Abstract Article PDF–645K

Select item 297464212.

Distribution Analysis of Hydrogenases in Surface Waters of Marine and Freshwater Environments

Martin Barz, Christian Beimgraben, Torsten Staller, Frauke Germer, Friederike Opitz, Claudia Marquardt, Christoph Schwarz, Kirstin Gutekunst, Klaus Heinrich Vanselow, Ruth Schmitz, Julie LaRoche, Rüdiger Schulz, Jens Appel

PLoS One. 2010; 5(11): e13846. Published online 2010 Nov 5. doi: 10.1371/journal.pone.0013846

PMCID:: PMC2974642

Abstract Article PDF–850K

Select item 266319613.

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

Naomi L. Ward, Jean F. Challacombe, Peter H. Janssen, Bernard Henrissat, Pedro M. Coutinho, Martin Wu, Gary Xie, Daniel H. Haft, Michelle Sait, Jonathan Badger, Ravi D. Barabote, Brent Bradley, Thomas S. Brettin, Lauren M. Brinkac, David Bruce, Todd Creasy, Sean C. Daugherty, Tanja M. Davidsen, Robert T. DeBoy, J. Chris Detter, Robert J. Dodson, A. Scott Durkin, Anuradha Ganapathy, Michelle Gwinn-Giglio, Cliff S. Han, Hoda Khouri, Hajnalka Kiss, Sagar P. Kothari, Ramana Madupu, Karen E. Nelson, William C. Nelson, Ian Paulsen, Kevin Penn, Qinghu Ren, M. J. Rosovitz, Jeremy D. Selengut, Susmita Shrivastava, Steven A. Sullivan, Roxanne Tapia, L. Sue Thompson, Kisha L. Watkins, Qi Yang, Chunhui Yu, Nikhat Zafar, Liwei Zhou, Cheryl R. Kuske

Appl Environ Microbiol. 2009 Apr; 75(7): 2046–2056. Published online 2009 Feb 5. doi: 10.1128/AEM.02294-08

PMCID:: PMC2663196

Abstract Article PDF–830K

Select item 264872914.

Methods for comparative metagenomics

Daniel H Huson, Daniel C Richter, Suparna Mitra, Alexander F Auch, Stephan C Schuster

BMC Bioinformatics. 2009; 10(Suppl 1): S12. Published online 2009 Jan 30. doi: 10.1186/1471-2105-10-S1-S12

PMCID:: PMC2648729

Abstract Article PDF–539K

Select item 993841915.

Enhanced leachate phytodetoxification test combined with plants and rhizobacteria bioaugmentation

Isni Arliyani, Bieby Voijant Tangahu, Sarwoko Mangkoedihardjo, Enny Zulaika, Setyo Budi Kurniawan

Heliyon. 2023 Jan; 9(1): e12921. Published online 2023 Jan 13. doi: 10.1016/j.heliyon.2023.e12921

PMCID:: PMC9938419

Abstract Article PDF–5.8M

Select item 969355216.

Building a Cell House from Cellulose: The Case of the Soil Acidobacterium Acidisarcina polymorpha SBC82^T

Svetlana E. Belova, Daniil G. Naumoff, Natalia E. Suzina, Vladislav V. Kovalenko, Nataliya G. Loiko, Vladimir V. Sorokin, Svetlana N. Dedysh

Microorganisms. 2022 Nov; 10(11): 2253. Published online 2022 Nov 14. doi: 10.3390/microorganisms10112253

PMCID:: PMC9693552

Abstract Article PDF–5.2M

Select item 966774117.

Genome mining reveals abiotic stress resistance genes in plant genomes acquired from microbes via HGT

Liangzhi Li, Shuguang Peng, Zhenhua Wang, Teng Zhang, Hongguang Li, Yansong Xiao, Jingjun Li, Yongjun Liu, Huaqun Yin

Front Plant Sci. 2022; 13: 1025122. Published online 2022 Nov 2. doi: 10.3389/fpls.2022.1025122

PMCID:: PMC9667741

Abstract Article PDF–8.5M

Select item 793812218.

Information theoretic perspective on genome clustering

Alaguraj Veluchamy, Preeti Mehta, K.V. Srividhya, Hirendra Vikram, M.K. Govind, Ramneek Gupta, Abdul Aziz Bin Dukhyil, Raed Abdullah Alharbi, Saleh Abdullah Aloyuni, Mohamed M. Hassan, S. Krishnaswamy

Saudi J Biol Sci. 2021 Mar; 28(3): 1867–1889. Published online 2020 Dec 31. doi: 10.1016/j.sjbs.2020.12.039

PMCID:: PMC7938122

Abstract Article PDF–1.5M

Select item 802782819.

Acidobacteria are active and abundant members of diverse atmospheric H₂-oxidizing communities detected in temperate soils

Andrew T. Giguere, Stephanie A. Eichorst, Dimitri V. Meier, Craig W. Herbold, Andreas Richter, Chris Greening, Dagmar Woebken

ISME J. 2021 Feb; 15(2): 363–376. Published online 2020 Oct 6. doi: 10.1038/s41396-020-00750-8

PMCID:: PMC8027828

Abstract Article PDF–2.2M

Select item 590088320.

Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments

Stephanie A. Eichorst, Daniela Trojan, Simon Roux, Craig Herbold, Thomas Rattei, Dagmar Woebken

Environ Microbiol. 2018 Mar; 20(3): 1041–1063. Published online 2018 Mar 12. doi: 10.1111/1462-2920.14043

PMCID:: PMC5900883

Abstract Article PDF–1.4M

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